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    Chinese Journal of Chromatography
    2013, Vol. 31, No. 6
    Online: 28 June 2013

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    Quantitative Proteomics
    Progress in stable isotope labeled quantitative proteomics methods
    ZHOU Yuan, SHAN Yichu, ZHANG Lihua, ZHANG Yukui
    2013, 31 (6):  496-502.  DOI: 10.3724/SP.J.1123.2013.05007
    Abstract ( 1385 )   [Full Text(HTML)] () PDF (501KB) ( 269 )  

    Quantitative proteomics is an important research field in post-genomics era. There are two strategies for proteome quantification: label-free methods and stable isotope labeling methods which have become the most important strategy for quantitative proteomics at present. In the past few years, a number of quantitative methods have been developed, which support the fast development in biology research. In this work, we discuss the progress in the stable isotope labeling methods for quantitative proteomics including relative and absolute quantitative proteomics, and then give our opinions on the outlook of proteome quantification methods.

    Recent progress in multi-stage mass spectrometry-based quantitative proteomics
    ZHANG Ying, YANG Pengyuan, LU Haojie
    2013, 31 (6):  503-509.  DOI: 10.3724/SP.J.1123.2013.03056
    Abstract ( 1329 )   [Full Text(HTML)] () PDF (451KB) ( 334 )  

    With the development of proteome research, quantitative proteomics is becoming a very active area of proteomics research. The development of quantitative proteomics requires the advancement of a number of mass spectrometry (MS)-based quantitative techniques. According to the mass spectrometric stage at which the peptides are quantified, MS-based quantitative methods can be divided into two categories: MS1-based quantitation and MSn-based quantitation. In this review, the progress of MSn-based quantitation approaches is summarized and the advantages and disadvantages are compared. The trend of MSn-based quantitation is also prospected.

    Detection of the major milk allergenα-casein in food with liquid chromatography-tandem mass spectrometry in multiple reaction monitoring mode
    FENG Xiaoyan, ZHANG Jin, LV Meiling, GAO Mingxia, ZHANG Xiangmin
    2013, 31 (6):  510-513.  DOI: 10.3724/SP.J.1123.2013.01003
    Abstract ( 1571 )   [Full Text(HTML)] () PDF (397KB) ( 386 )  

    A new method of detecting milk allergen protein in food was established. Using multiple reaction monitoring (MRM) mode in high performance liquid chromatography-mass spectrometry (HPLC-MS) to detect milk allergen protein α-casein is successful and convenient. All transitions gave a linear response in the chosen concentration range of the milk allergen protein (between 0.5 and 250 mg/L total soluble protein, 5 data points), and the detection limit is 0.5 mg/L of α-casein. Food samples from markets were tested. The results showed that MRM method could be used to detect the milk allergen in food products.

    Identification of methylation at lysine 27 and 36 sites in histone H3
    WANG Guojuan, ZHANG Kai, HE Xiwen, ZHANG Yukui
    2013, 31 (6):  514-517.  DOI: 10.3724/SP.J.1123.2013.01008
    Abstract ( 1288 )   [Full Text(HTML)] () PDF (371KB) ( 129 )  

    we combined high performance liquid chromatography and tandem mass spectrometry (HPLC-MS/MS) with bioinformatics tools to analyze the isobaric modified peptides which were methylated and dimethylated at either lysine (K) 27 or/and K36 from histone H3. They were identified and dissected through alignment of every fragment ion, and the two modified sites were further analyzed according to their relative intensities of MS/MS spectra.

    A novel and facile microchip based on nitrocellulose membrane toward efficient capture of circulating tumor cells
    ZHANG Peng, SUN Changlong, ZHANG Ren, GAO Mingxia, ZHANG Xiangmin
    2013, 31 (6):  518-521.  DOI: 10.3724/SP.J.1123.2013.01022
    Abstract ( 1536 )   [Full Text(HTML)] () PDF (497KB) ( 158 )  

    A novel and facile circulating tumor cell (CTC) microchip has been developed for the isolation and detection of cancer cells. The CTC microchip was prepared based on the nitrocellulose membrane substrate, which shows high affinity to proteins and hence can adsorb antibodies naturally. We employed non-small-cells of lung cancer NCI-H1650 as target cells and testified the high capture efficacy of the CTC microchip. Furthermore, we spiked 500 cancer cells to 1 mL healthy donor’s whole blood in order to simulate the detection of CTC in patient and detected 182 cancer cells ultimately, indicating the huge application potential in the future.

    A novel method for absolute protein quantification using 18O isotope labeled concatamers of Q peptides combined with isotope dilution-multiple reaction monitoring mass spectrometry
    LI Nannan, ZHOU Lianqi, MAO Xinli, ZHANG Jiao, WEI Junying, LIN Hongjun, LI Jiabin, TIAN Fang, ZHANG Yangjun, QIAN Xiaohong
    2013, 31 (6):  522-530.  DOI: 10.3724/SP.J.1123.2013.03057
    Abstract ( 1175 )   [Full Text(HTML)] () PDF (649KB) ( 264 )  

    A method of concatamers of Q peptides (QconCATs) protein labeled with 18O-multiple reaction monitoring mass spectrometry for absolute quantification of proteins is established. The purity of the QconCAT recombinant protein was characterized by sodium dodecyl sulphate-polyacrylamide gel electrophoresis (SDS-PAGE), and its purity was above 99%. The relative molecular mass was approximately 63.4 kDa. The peptides digested from the QconCAT recombinant protein and the extract of Thermoanaerobacter tengcongensis (TTE) were analyzed by mass spectrometry. The raw data were processed by pFind and pLabel softwares. The results showed that the efficiencies of protein digestion and the 18O labeling efficiency were able to meet the need of the protein quantification. The performance of the method was evaluated. The absolute contents of the selected proteins in TTE were determined with the relative standard deviations of less than 20% and the accuracy is high. The method not only avoid using the expensive reagent of stable isotope labeling with amino acids in cell culture (SILAC), but also provides an alternative way for the accurately absolute quantification of proteins in biological samples for quantitative proteomic research.

    Preparation of organic-inorganic hybrid boronate affinity monolith via thiol-ene click reaction for specific capture of glycoproteins
    YANG Fan, MAO Jie, HE Xiwen, CHEN Langxing, ZHANG Yukui
    2013, 31 (6):  531-536.  DOI: 10.3724/SP.J.1123.2013.04023
    Abstract ( 1332 )   [Full Text(HTML)] () PDF (489KB) ( 354 )  

    A novel strategy for the preparation of the organic-inorganic hybrid boronate affinity monolith was developed via the "thiol-ene" click reaction. A thiol group-modified silica monolith was first synthesized via the sol-gel process by the in situ co-condensation with tetramethoxysilane (TMOS) and 3-mercaptopropyltrimethoxysilane (MPTMS) as precursors. Then 3-acrylamidophenylboronic acid (AAPBA) was covalently immobilized on the hybrid monolith via the "thiol-ene" click reaction to form AAPBA-silica hybrid affinity monolith. The reaction conditions for the preparation of AAPBA-silica hybrid affinity monolith were optimized, including the ratio of TMOS to MPTMS, the contents of poly(ethylene glycol) (PEG) and methanol. The morphology and mechanical stability of the boronate affinity monolith were characterized and evaluated by scanning electron microscopy and Fourier-transform infrared spectroscopy. The obtained boronate affinity hybrid monolith exhibited excellent specificity toward the nucleosides containing cis-diols under neutral conditions. It was further applied to the specific capture of the glycoproteins ovalbumin and horseradish peroxidase. The method is novel and reliable, which has a great potential for the preparation of different kinds of the boronate affinity monoliths.

    Comparison of one-step and two-step methods for pI determination of proteins and polypeptides by capillary isoelectric focusing
    GAO Peifeng, ZHAO Xinying, HE Muyi, LIU Qingsheng, QU Feng
    2013, 31 (6):  537-542.  DOI: 10.3724/SP.J.1123.2013.03059
    Abstract ( 1143 )   [Full Text(HTML)] () PDF (491KB) ( 160 )  

    One-step and two-step capillary isoelectric focusing (cIEF) methods were employed for the separation and pI determination of proteins and polypeptides. The parameters affecting the analysis efficiency, such as the sample solution, injection volume, focusing voltage, focusing time and driving conditions were optimized. The comparison of the two methods for separation of cytochrome C, hemoglobin, myoglobin, transferrin, bovine serum albumin and six polypeptides showed that the one-step cIEF was simple and fast, which could determine the pI of single component as well as it was rapid for protein and polypeptide separation, but it could not get good resolution or accurate pI of each component in a mixed sample. The two-step cIEF was more complex and needed longer time, however, which could separate and exactly determine the pI of each component in the mixture, and the pI value of each component determined was consistent with that determined using a single sample. The two methods are complementary, and can be widely used in rapid and accurate determination of the pI of amphiphilic biological particles.

    Characterization of stability of polypeptides and glycoproteins by capillary electrophoresis
    WANG Yong, GAO Peifeng, ZHAO Xinying, QU Feng
    2013, 31 (6):  543-549.  DOI: 10.3724/SP.J.1123.2013.03052
    Abstract ( 1118 )   [Full Text(HTML)] () PDF (691KB) ( 133 )  

    A capillary electrophoresis (CE) method was developed for the stability characterization of polypeptides and glycoproteins. Angiotensin II (Ang II), phytagglutinin (PHA), bovine thrombin (B-Thr), human thrombin (H-Thr) and horseradish peroxidase (HRP) were used as polypeptide and glycoprotein mode molecules. The parameters affecting the analysis efficiency for Ang II, such as sample concentration, running buffer, pH and ionic strength of sample solution were optimized, as for the glycoprotein, capillary conditions, charge state of sample, running buffer and applied voltage were optimized. It showed that the Ang II was stable when kept in borate buffer (0.02 mol/L pH 7.4) at 4℃ for 48 h. The four glycoproteins were quite stable in borate buffer (0.2 mol/L pH 7.4) at 20, 4, -20℃ for 48 h, and also kept stable at -20℃ when deposited over one week and less than four weeks. HRP was the only one that kept stable when deposited over two weeks and less than four weeks. This method is effective, rapid, simple and low-cost and can be widely used for the stability characterization of polypeptides and glycoproteins.

    Comparison for applicability of different trilinear decomposition algorithms to liquid chromatography-mass spectrometry data measured from multiple samples
    ZHANG Shurong, WU Hailong, ZHAI Min, KANG Chao, YIN Xiaoli, YU Ruqin
    2013, 31 (6):  550-555.  DOI: 10.3724/SP.J.1123.2013.03051
    Abstract ( 1132 )   [Full Text(HTML)] () PDF (507KB) ( 98 )  

    The applicability of different trilinear decomposition algorithm to LC-MS data measured from multiple samples is discussed in this paper. An actual LC-MS data set contained a low abundance peptide was adopted to make a test for these algorithms. The bilinear method was not able to handle this type of low abundance situations, and made a mathematical separation as expected. It is found out that the famous trilinear decomposition algorithm could not be used in the LC-MS data directly. The most probable reason is the sparsity property of the pure MS spectra, which means they have positive response values at some m/z coordinates where the ions emerged and zero values elsewhere. A novel algorithm named NNATLD (non-negative alternating trilinear decomposition) has been designed by the present authors to make an effective trilinear decomposition for the three-way data set constructed by LC-MS data. The new algorithm adapts the property of MS spectra, saves the computing resources, and converges fast.

    Articles
    Determination of undecanoic acid and 13-methyl-tetradecanoic acid connected to the glyceride with internal standard method and its application to the identification of adulteration of illegal cooking oil
    JIN Jing, CHEN Jiping, TIAN Yuzeng, ZOU Lili, WANG Longxing, LI Fang
    2013, 31 (6):  556-560.  DOI: 10.3724/SP.J.1123.2012.12036
    Abstract ( 1343 )   [Full Text(HTML)] () PDF (396KB) ( 164 )  

    On the basis of the source of illegal cooking oil (heated vegetable oil and animal oil) and the important referents reflecting their sources, namely, undecanoic acid and 13-methyl-tetradecanoic acid connected to the glyceride, their corresponding ramifications in edible oil were detected with internal standard method. The sensitivity and selectivity of this method were improved by the on-line cleanup and preconcentration. The detection limits of the method were 0.070 mg/kg for undecanoic acid and 0.006 mg/kg for 13-methyl-tetradecanoic acid. Additionally, most of the normal vegetable oils have lower levels of both fatty acids than illegal cooking oils. It was suggested to evaluate the quality of edible oils to some extent on the basis of the contents of undecanoic acid and 13-methyl-tetradecanoic acid.

    Application of quality by design concept for the optimization of an analytical method for rhubarb anthraquinones in rat plasma
    SHEN Xiong, LU Jiwei, LIANG Jian, YANG Chunxin, LÜ Qianzhou
    2013, 31 (6):  561-566.  DOI: 10.3724/SP.J.1123.2012.12015
    Abstract ( 1439 )   [Full Text(HTML)] () PDF (450KB) ( 188 )  

    A robust high performance liquid chromatography with fluorescence detection method (HPLC-FLD) was developed for the determination of five rhubarb anthraquinones in rat plasma using a quality by design approach. A Plackett-Burman design was utilized to screen the effects of methanol content, the pH value of mobile phase, the flow rate, column temperature, and injection volume on peak resolution, number of the theoretical plate, retention time of the last eluted peak, and tailing factor. The results showed that the methanol content in mobile phase, flow rate, and column temperature were statistically significant (p < 0.05). A Box-Behnken experimental design with response surface methodology (RSM) was then utilized to evaluate the effects of these three factors on the selected responses. Derringer’s desirability function was used for the evaluation of the chromatographic goals. The optimum conditions for separation were as follows: an isocratic mobile phase consisting of methanol/0.1%H3PO4 (81.4/18.6, v/v), a flow rate of 1.1 mL/min, and a column temperature of 31℃. The excitation and emission wavelengths were 440 nm and 540 nm, respectively. The proposed method showed good prediction ability. The results clearly showed that quality by design concept could be effectively applied to optimize the HPLC method.

    Simultaneous determination of ciprofloxacin and flumequine in water samples by high performance liquid chromatography
    LI Lu, LIU Fei, CHEN Honghan, QIN Xiaopeng
    2013, 31 (6):  567-571.  DOI: 10.3724/SP.J.1123.2012.12052
    Abstract ( 1420 )   [Full Text(HTML)] () PDF (404KB) ( 188 )  

    In order to meet the field sample measurements and laboratory research, a simple, stable, and popular high performance liquid chromatographic (HPLC) method was established for the determination of the concentrations of two fluoroquinolone antibiotics in water samples simultaneously and rapidly. Thus, it could provide valuable information for other scholars to study the interactions between different antibiotics. Ciprofloxacin (CIP) and flumequine (FLU) were taken as the target contaminants because of their wide application in medical career. Furthermore, this study also investigated the different types of mobile phase, different mobile phase ratios, common ions (Ca2+, Mg2+, Fe3+, Al3+, SO42-and HCO3-) in water samples and other factors on CIP and FLU measurements with this method. The results showed that triethylamine has obvious effect on improving column efficiency. Low concentrations of ions had little effect on the test, but Fe3+and Al3+might cause baseline instability, because Fe3+and Al3+may form complexes with the surface hydroxyl groups of the stationary phase or the test components. The results may be referred by other workers for the optimization of the determination conditions.

    Determination of atracurium and laudanosine in dog plasma during cardiopulmonary bypass by high performance liquid chromatography with fluorometric detection
    YANG Yingying, CHEN Mei, KUANG Yushan, YE Liming, ZHANG Wensheng
    2013, 31 (6):  572-576.  DOI: 10.3724/SP.J.1123.2012.12013
    Abstract ( 1384 )   [Full Text(HTML)] () PDF (399KB) ( 265 )  

    A high performance liquid chromatographic method coupled with fluorometric detection has been developed for the determination of atracurium and its major metabolite laudanosine in dog plasma. The separation of atracurium and laudanosine was performed on an Agilent Eclipse Plus C18 column, and the mobile phase consisted of 0.03 mol/L dipotassium hydrogen phosphate and acetonitrile (72:28, v/v) at a flow rate of 1.0 mL/min. Verapamil was used as the internal standard. The sample was extracted by dichloromethane, concentrated and dissolved in the mobile phase. The detection is performed at 240 nm for excitation and 320 nm for emission. The results showed that the linear concentration ranges of the calibration curve were 25-5000 μ g/L for atracurium (r=0.9990), and 25-6000 μ g/L for laudanosine (r=0.9984). The recoveries were 92.1%-109.5%. The limits of detection were 3 μ g/L for atracurium and 1 μ g/L for laudanosine. The RSDs of intra-day and inter-day were less than 10%. The stability tests under various conditions have been performed. The method is specific, sensitive and accurate in the determination of atracurium and laudanosine, and also can be used for the pharmacokinetic investigations of atracurium and laudanosine in plasma.

    Simultaneous determination of tryptophan and its metabolites in plasma by high performance liquid chromatography with on-column derivatization
    FENG Chengya, GAO Jieying, ZHEN Qianna, FAN Zimian, ZHU Mingsong, YANG Xiangchun, DING Min
    2013, 31 (6):  577-581.  DOI: 10.3724/SP.J.1123.2013.01054
    Abstract ( 1225 )   [Full Text(HTML)] () PDF (408KB) ( 191 )  

    A high performance liquid chromatography-ultraviolet/fluorescence detection (HPLC-UV/FLD) with on-column derivatization was established to simultaneously determine tryptophan (Trp), kynurenine (Kyn), 5-hydroxyindole acetic acid (5-Hiaa) and kynurenic acid (Kyna). A Hypersil C-18 column (250 mm×4.0 mm, 5 μ m) was used for the analysis at 30℃. The separation was carried out with the mobile phase consisting of 250 mmol/L zinc acetate (pH 5.5) and acetonitrile (95:5, v/v) at a flow rate of 0.8 mL/min using 3-nitrotyrosine as internal standard (IS). The excitation (Ex) and emission (Em) wavelengths were set at 278 nm (λex)/343 nm (λem) for 5-Hiaa and 244 nm (λex)/400 nm (λem) for Kyna, while the wavelengths of ultraviolet detection were set at 360 nm for Kyn and IS, 302 nm for Trp. The recoveries were in the range of 91.62% to 114.17%. The linearities were from 2.50 μ mol/L to 320.00 μ mol/L for Trp, 0.32 μ mol/L to 15.36 μ mol/L for Kyn, 3.27 nmol/L to 104.60 nmol/L for 5-Hiaa, and 14.00 nmol/L to 464.80 nmol/L for Kyna. The detection limits were 0.078 μ mol/L, 0.056 μ mol/L, 0.690 nmol/L and 1.290 nmol/L for Trp, Kyn, 5-Hiaa, and Kyna, respectively. Thirty plasma samples of normal pregnant women and 28 plasma samples of healthy controls were tested, and the results exhibited that the concentrations of Trp, Kyn and Kyna in the plasma of the normal pregnant women were significantly different from those of the control group (all P < 0.01). The method is simple and sensitive with good reproducibility, and it is suitable for clinical measurements.

    Determination of K-ras gene mutation in colorectal cancer tissue by capillary electrophoresis
    SHI Dongqin, WANG Rong, XIE Hua, TIAN Wei, JIA Zhengping, GUO Jiankui
    2013, 31 (6):  582-586.  DOI: 10.3724/SP.J.1123.2012.12023
    Abstract ( 1415 )   [Full Text(HTML)] () PDF (384KB) ( 170 )  

    The codons 12/13 of K-ras genomic DNA from 76 colorectal cancer tissues and normal tissues were amplified by PCR. The amplified 152 samples were purified, denatured, and then detected using capillary electrophoresis (CE)-laser induced fluorescence (LIF) with single-strand conformation polymorphism (SSCP). The abnormal samples were further confirmed by direct-sequencing. The 30 patients of the 76 colorectal cancer patients were found gene mutation, of which the results of base G→A point mutation were confirmed by the gene sequence. To detect K-ras gene mutation that has important role in clinical forecast, diagnosis, therapy and prognosis, the CE-LIF with SSCP was applied for detecting K-ras gene. It becomes a promising tool to analyse K-ras gene mutation in the clinical diagnosis and therapy of colorectal cancer tissue.

    Preparation and evaluation of molecularly imprinted polymer of olivetol for solid phase extraction
    JIN Yafeng, CHEN Na, LIU Runqiang, CHEN Jun, BAI Lianyang, ZHANG Yuping
    2013, 31 (6):  587-595.  DOI: 10.3724/SP.J.1123.2012.12014
    Abstract ( 1958 )   [Full Text(HTML)] () PDF (404KB) ( 375 )  

    Molecularly imprinted polymer (MIP) was synthesized by bulk polymerization, using olivetol as template molecule, methyl acrylic acid (MAA) as monomer, ethylene glycol dimethacrylate (EDMA) as crosslinker, toluene and dodecanol as solvents. The resulted MIP was characterized by the equilibrium binding experiments, scanning electron microscope (SEM) and Fourier transform infrared spectrometer (FTIR). The polymer was then applied to solid phase extraction (SPE) of olivetol from spiked wheat bran samples. From the equilibrium binding experiments, it was showed that MIP had a better recognizability for the template molecule. Scatchard analysis showed that MIP had specific adsorption to olivetol with two classes of binding sites. The high and low binding sites dissociation constants were 0.021 and 1.002 mmol/L. The corresponding maximum binding capacities were 18.74 and 135.9 μ mol/g, respectively. Under the optimum condition of SPE, the recoveries of olivetol on MIP cartridge were in the range of 97.8%-98.8%. The relative standard deviations (RSDs) were 2.8%-4.2%. The linearity range was between 0.1 and 100 mg/L. The limit of detection (S/N=3) was 0.062 mg/L. MIP cartridge showed stronger selectivity, higher recovery and purified the sample more drastically compared with non-imprinted polymer (NIP) cartridge and commercial poly(styrene/divinylbenzene) (PLS) cartridge.

    Technical Notes
    Analysis of cracking gas compressor fouling by pyrolysis gas chromatography-mass spectrometry
    HU Yunfeng, FANG Fei, WEI Tao, LIU Shuqing, JIANG Guangshen, CAI Jun
    2013, 31 (6):  596-599.  DOI: 10.3724/SP.J.1123.2012.12021
    Abstract ( 1324 )   [Full Text(HTML)] () PDF (360KB) ( 190 )  

    The fouling from the different sections of the cracked gas compressor in Daqing Petrochemical Corporation was analyzed by pyrolysis gas chromatography-mass spectrometry (Py/GC-MS). All the samples were cracked in RJ-1 tube furnace cracker at the cracking temperature of 500℃, and separated with a 60 m DB-1 capillary column. An electron impact ionization (EI) source was used with the ionizing voltage of 70 eV. The results showed the formation of fouling was closely related with cyclopentadiene which accounted for about 50% of the cracking products. Other components detected were 1-butylene, propylene, methane and n-butane. This Py/GC-MS method can be used as an effective approach to analyze the causes of fouling in the petrochemical plants.